Table 3: Different regions present in secondary structure.
|
Sr # |
Family |
Members(miRNAs) |
Flanking Regions |
Stems |
Loops |
Bulges |
Seed Region |
|
1 |
hsa-miR-1305/ hsa-miR-1305 |
hsa-miR-1305 |
1-7/20-22 |
8-10/17-19 |
11-16 |
- |
UUUCAAC
|
|
2 |
hsa-miR-548c-5p/ miR-548-5p/559
|
a) hsa-miR-548a-5p |
1-2/11-22 |
3-4/9-10 |
5-8 |
- |
AAAGUAA |
|
b) hsa-miR-548ab |
1-2/22 |
3-4/9-13/9-21 |
5-8/14-18 |
- |
|||
|
c) hsa-miR-548ad-5p |
1-2/11-20 |
3-4/9-10 |
5-8 |
- |
|||
|
d) hsa-miR-548ae-5p |
1-2/11-20 |
3-4/9-10 |
5-8 |
- |
|||
|
e) hsa-miR-548ak |
1-6/17-21 |
7-9/14-16 |
10-13 |
- |
|||
|
f) hsa-miR-548am-5p |
1-2 |
3-4/9-10/13-15/20-22 |
5-8/16-19 |
11-12 |
|||
|
g) hsa-miR-548ap-5p |
1-2/11-19 |
3-4/9-10 |
5-8 |
- |
|||
|
h) hsa-miR-548aq-5p |
1-2/22 |
3-4/9-12/20-21 |
5-8/13-19 |
- |
|||
|
i) hsa-miR-548ar-5p |
1-2 |
3-4/9-13/19-21 |
5-8/14-18 |
- |
|||
|
j) hsa-miR-548as-5p |
1-2/22 |
3-4/9-12/20-21 |
5-8/13-19 |
- |
|||
|
k) hsa-miR-548au-5p |
1-2 |
3-4/9-12/20-21 |
5-8/13-19 |
- |
|||
|
l) hsa-miR-548ay-5p |
1-2/11-21 |
3-4/9-10 |
5-8 |
- |
|||
|
m) hsa-miR-548b-5p |
1-2 |
3-4/9-10/13-15/20-22 |
5-8/16-19 |
11-12 |
|||
|
n) hsa-miR-548bb-5p |
1-12 |
13-15/20-22 |
16-19 |
- |
|||
|
o) hsa-miR-548c-5p |
1-2 |
3-4/9-10/13-15/20-24 |
5-8/16-19 |
11-12 |
|||
|
p) hsa-miR-548d-5p |
1-2 |
3-4/9-10/13-15/20-22 |
5-8/16-19 |
11-12 |
|||
|
q) hsa-miR-548h-5p |
1-3/10-22 |
4/9 |
5-8 |
- |
|||
|
r) hsa-miR-548i |
1-2/22 |
3-4/9-12/20-21 |
5-8/13-19 |
- |
|||
|
s) hsa-miR-548j-5p |
1-2/11-22 |
3-4/9-10 |
5-8 |
- |
|||
|
t) hsa-miR-548o-5p |
1-2 |
3-4/9-10/13-15/20-22 |
5-8/16-19 |
11-12 |
|||
|
u) hsa-miR-548w |
1-4/23 |
5/12-15/20-22 |
6-11/16-19 |
- |
|||
|
v) hsa-miR-548y |
1-3/22 |
4/9/14-15/20-21 |
5-8/16-19 |
10-13 |
|||
|
w) hsa-miR-559 |
1-4/15-21 |
5-7/12-14 |
8-11 |
- |
|||
|
3 |
hsa-miR-4429/miR-320/4429 |
hsa-miR-320a |
1-8/21-22 |
9/11-12/17-18/20 |
13-16 |
10/19 |
AAAGCUG
|
|
a) hsa-miR-320b |
1-8/21-22 |
9/11-12/17-18/20 |
13-16 |
10/19 |
|||
|
b) has-miR-320c |
1-10/19-20 |
11-12/17-18 |
13-16 |
- |
|||
|
c) hsa-miR-320d |
1-10/19 |
11-12/17-18 |
13-16 |
- |
|||
|
d) hsa-miR-4429 |
1-9/20 |
10-12/17-19 |
13-16 |
- |
|||
|
4 |
hsa-miR-26b-5p/miR-26-5p/1297/4465 |
a) hsa_miR-26a-5p |
1-4/21 |
5/10-12/19-20 |
6-9/13-18 |
- |
UCAAGUA
|
|
b) hsa_miR-26b-5p |
1-2/15-21 |
3-5/10-11/14 |
6-9 |
12-13 |
|||
|
c) hsa_miR-1297 |
1-2/15-17 |
3-5/10-11/14 |
6-9 |
12-13 |
|||
|
d) hsa_miR-4465 |
1-2/14-22 |
3/6/11/13 |
7-10 |
4-5/12 |
|||
|
5 |
hsa-miR-548k/miR-548-5p/8054 |
a) hsa_miR-548av-5p |
1-7/14-18 |
8/10-11/13 |
--- |
- |
AAAGUAC |
|
b) hsa_miR-548k |
1-10/22 |
11-12/20-21 |
13-19 |
- |
|||
|
c)hsa_miR-8054 |
1-7/19-21 |
8-9/17-18 |
10-16 |
- |
|||
|
6 |
hsa-miR-107/miR103-3P/107 |
a) hsa-miR-103a-3p |
1-3/20-23 |
4-6/17-19 |
7-16 |
- |
GCAGCAU |
|
b) hsa-miR-107 |
1-3/20-23 |
4-6/17-19 |
7-16 |
- |
|||
|
7 |
hsa-miR-21-3p/miR-21-3p/3591-p |
a) hsa-miR-21-3p |
1-6/21 |
7-11/16-20 |
12-15 |
- |
AACACCA |
|
b) has-miR-3591-3p |
1-312-22 |
4-5/10-11 |
6-9 |
- |
|||
|
8 |
hsa-miR-590-3p/miR-590-3p |
has-miR-590-3p |
1-9/18-21 |
10/17 |
11-16 |
- |
AAUUUUA |
|
9 |
hsa-miR-362-3p/miR-329-3p/362-3p |
a) hsa-miR-329-3p |
1-3/18-22 |
4/9-11/16-17 |
5-8/12-15 |
- |
ACACACC |
|
b) has-miR-362-3p |
1-6/18-22 |
7-9/15-17 |
10-14 |
- |
|||
|
10 |
hsa-miR-335-3p/miR-335-5p |
hsa-miR-335-3p |
1-4/21-22 |
5-7/18-20 |
8-17 |
- |
UUUUCAU |
|
11 |
hsa-miR-33a-5p/miR-33-5p
|
a) hsa-miR33a-5p |
1-2/21 |
3-5/7-9/14-16/18-20 |
10-13 |
6/17 |
UGCAUUG |
|
b) hsa-miR33b-5p |
1-2 |
3-5/7-9/14-16/18-20 |
10-13 |
6/17 |
|||
|
12 |
hsa-miR-3140-3p/miR-3140-3p |
hsa-miR-3140-3p |
1/20-22 |
2-5/16-19 |
6-15 |
- |
GCUUUUG |
|
13 |
hsa-miR-3619-5p/miR-214-3p/761/3619-5p |
a) hsa-miR-214-3p |
1-3/20-22 |
4-5/18-19 |
6-17 |
- |
CAGCAGG
|
|
b) has-miR-761 |
1-4/18-22 |
5-7/15-17 |
8-14 |
- |
|||
|
c) hsa-miR-3619-5p |
1/16-22 |
2-5/12-15 |
6-11 |
- |
|||
|
14 |
hsa-miR-32-3p/miR-32-3p |
hsa-miR-32-3p |
- |
- |
1-22 |
- |
AAUUUAG |
|
15 |
hsa-miR-548e-3p/miR-548ar-3p/548ar-3p/548az-3p/548e-3p/548f-3p |
a) hsa-miR-548a-3p |
1-8 |
9-12/19-22 |
13-18 |
- |
AAAACUG |
|
b) hsa-miR-548ar-3p |
1-7 |
8-11/18-21 |
12-17 |
- |
|||
|
c) hsa-miR-548az-3p |
1-7 |
8-11/18-21 |
12-17 |
- |
|||
|
d) hsa-miR-548e-3p |
- |
- |
1-22 |
- |
|||
|
e) hsa-miR-548f-3p |
- |
- |
1-19 |
- |
|||
|
16 |
hsa-miR-576-5p/miR-576-5p |
hsa-miR-576-5p |
- |
- |
1-22 |
- |
UUCUAAU |
|
17 |
hsa-miR-548o-3p/miR-548-3p/1323 |
a) hsa-miR-548o-3p |
1/22 |
2-6/17-21 |
7-16 |
|
CAAAACU |
|
b) hsa-miR-1323 |
- |
- |
1-22 |
- |
|||
|
18 |
hsa-miR-320e/miR-320 |
hsa-miR-320e |
1-4/18 |
5-6/16-17 |
7-15 |
- |
AAGCUGG |
|
19 |
hsa-miR-424-5p/miR-15-5p/16-5p/195-5p/424-5p/497-5p/6838-5p |
a) hsa-miR-15a-5p |
1-6 |
7-10/19-22 |
11-18 |
- |
AGCAGCA |
|
b) hsa-miR-15b-5p |
1-3/16-22 |
4-5/14-15 |
6-13 |
- |
|||
|
c) hsa-miR-16-5p |
1-5/22 |
6-7/20-21 |
8-19 |
- |
|||
|
d) hsa-miR-195-5p |
1-2 |
3-4/10/15/20-21 |
11-14 |
5-9/16-19 |
|||
|
e) has-miR-424-5p |
1-4/21-22 |
5/10/12-13/19-20 |
69/14-18 |
11 |
|||
|
f) hsa-miR-497-5p |
1-2/15-21 |
3-6/11-14 |
7-10 |
- |
|||
|
g) hsa-miR-6838-5p |
1-2/15-22 |
3-4/12-13 |
5-11 |
|
|||
|
20 |
hsa-miR-450b-5p/miR-450-5p |
hsa-miR-450b-5p |
- |
- |
- |
1-22 |
UUUGCAA
|
|
21 |
hsa-miR-142-5p/ miR-142-5p/5590-3p |
a) hsa-miR-142-5p |
1-5 |
6-10/17-21 |
11-16 |
- |
AUAAAGU
|
|
b) hsa-miR-5590-3p |
1-6/20-21 |
7-9/17-19 |
10-16 |
- |
|||
|
22 |
hsa-miR-29b-3p/miR-29-3p |
a) hsa-miR-29a-3p |
1-4/21-22 |
5-7/18-20 |
8-17 |
- |
AGCACCA
|
|
b) hsamiR-29b-3p |
1-2/22-23 |
3-6/19-21 |
7-18 |
- |
|||
|
c) hsa-miR-29c-3p |
1-4/21-22 |
5-7/18-20 |
18-17 |
- |
|||
|
23 |
hsa-miR-589-3p/miR-589-3p |
hsa-miR-589-3p |
1-3/20-24 |
4-7/16-19 |
8-15 |
- |
CAGAACA |