Table 3: Different regions present in secondary structure.

Sr #

Family

Members(miRNAs)

Flanking Regions

Stems

Loops

Bulges

Seed Region

1

hsa-miR-1305/

hsa-miR-1305

hsa-miR-1305

1-7/20-22

8-10/17-19

11-16

-

UUUCAAC

 

2

hsa-miR-548c-5p/

miR-548-5p/559

 

a) hsa-miR-548a-5p

1-2/11-22

3-4/9-10

5-8

-

AAAGUAA

b) hsa-miR-548ab

1-2/22

3-4/9-13/9-21

5-8/14-18

-

c) hsa-miR-548ad-5p

1-2/11-20

3-4/9-10

5-8

-

d) hsa-miR-548ae-5p

1-2/11-20

3-4/9-10

5-8

-

e) hsa-miR-548ak

1-6/17-21

7-9/14-16

10-13

-

f) hsa-miR-548am-5p

1-2

3-4/9-10/13-15/20-22

5-8/16-19

11-12

g) hsa-miR-548ap-5p

1-2/11-19

3-4/9-10

5-8

-

h) hsa-miR-548aq-5p

1-2/22

3-4/9-12/20-21

5-8/13-19

-

i) hsa-miR-548ar-5p

1-2

3-4/9-13/19-21

5-8/14-18

-

j) hsa-miR-548as-5p

1-2/22

3-4/9-12/20-21

5-8/13-19

-

k) hsa-miR-548au-5p

1-2

3-4/9-12/20-21

5-8/13-19

-

l) hsa-miR-548ay-5p

1-2/11-21

3-4/9-10

5-8

-

m) hsa-miR-548b-5p

1-2

3-4/9-10/13-15/20-22

5-8/16-19

11-12

n) hsa-miR-548bb-5p

1-12

13-15/20-22

16-19

-

o) hsa-miR-548c-5p

1-2

3-4/9-10/13-15/20-24

5-8/16-19

11-12

p) hsa-miR-548d-5p

1-2

3-4/9-10/13-15/20-22

5-8/16-19

11-12

q) hsa-miR-548h-5p

1-3/10-22

4/9

5-8

-

r) hsa-miR-548i

1-2/22

3-4/9-12/20-21

5-8/13-19

-

s) hsa-miR-548j-5p

1-2/11-22

3-4/9-10

5-8

-

t) hsa-miR-548o-5p

1-2

3-4/9-10/13-15/20-22

5-8/16-19

11-12

u) hsa-miR-548w

1-4/23

5/12-15/20-22

6-11/16-19

-

v) hsa-miR-548y

1-3/22

4/9/14-15/20-21

5-8/16-19

10-13

w) hsa-miR-559

1-4/15-21

5-7/12-14

8-11

-

3

hsa-miR-4429/miR-320/4429

hsa-miR-320a

1-8/21-22

9/11-12/17-18/20

13-16

10/19

AAAGCUG

 

a) hsa-miR-320b

1-8/21-22

9/11-12/17-18/20

13-16

10/19

b) has-miR-320c

1-10/19-20

11-12/17-18

13-16

-

c) hsa-miR-320d

1-10/19

11-12/17-18

13-16

-

d) hsa-miR-4429

1-9/20

10-12/17-19

13-16

-

4

hsa-miR-26b-5p/miR-26-5p/1297/4465

a) hsa_miR-26a-5p

1-4/21

5/10-12/19-20

6-9/13-18

-

UCAAGUA

 

b) hsa_miR-26b-5p

1-2/15-21

3-5/10-11/14

6-9

12-13

c) hsa_miR-1297

1-2/15-17

3-5/10-11/14

6-9

12-13

d) hsa_miR-4465

1-2/14-22

3/6/11/13

7-10

4-5/12

5

hsa-miR-548k/miR-548-5p/8054

a) hsa_miR-548av-5p

1-7/14-18

8/10-11/13

---

-

AAAGUAC

b) hsa_miR-548k

1-10/22

11-12/20-21

13-19

-

c)hsa_miR-8054

1-7/19-21

8-9/17-18

10-16

-

6

hsa-miR-107/miR103-3P/107

a) hsa-miR-103a-3p

1-3/20-23

4-6/17-19

7-16

-

GCAGCAU

b) hsa-miR-107

1-3/20-23

4-6/17-19

7-16

-

7

hsa-miR-21-3p/miR-21-3p/3591-p

a) hsa-miR-21-3p

1-6/21

7-11/16-20

12-15

-

AACACCA

b) has-miR-3591-3p

1-312-22

4-5/10-11

6-9

-

8

hsa-miR-590-3p/miR-590-3p

has-miR-590-3p

1-9/18-21

10/17

11-16

-

AAUUUUA

9

hsa-miR-362-3p/miR-329-3p/362-3p

a) hsa-miR-329-3p

1-3/18-22

4/9-11/16-17

5-8/12-15

-

ACACACC

b) has-miR-362-3p

1-6/18-22

7-9/15-17

10-14

-

10

hsa-miR-335-3p/miR-335-5p

hsa-miR-335-3p

1-4/21-22

5-7/18-20

8-17

-

UUUUCAU

11

hsa-miR-33a-5p/miR-33-5p

 

a) hsa-miR33a-5p

1-2/21

3-5/7-9/14-16/18-20

10-13

6/17

UGCAUUG

b) hsa-miR33b-5p

1-2

3-5/7-9/14-16/18-20

10-13

6/17

12

hsa-miR-3140-3p/miR-3140-3p

hsa-miR-3140-3p

1/20-22

2-5/16-19

6-15

-

GCUUUUG

13

hsa-miR-3619-5p/miR-214-3p/761/3619-5p

a) hsa-miR-214-3p

1-3/20-22

4-5/18-19

6-17

-

CAGCAGG

 

b) has-miR-761

1-4/18-22

5-7/15-17

8-14

-

c) hsa-miR-3619-5p

1/16-22

2-5/12-15

6-11

-

14

hsa-miR-32-3p/miR-32-3p

hsa-miR-32-3p

-

-

1-22

-

AAUUUAG

15

hsa-miR-548e-3p/miR-548ar-3p/548ar-3p/548az-3p/548e-3p/548f-3p

a) hsa-miR-548a-3p

1-8

9-12/19-22

13-18

-

AAAACUG

b) hsa-miR-548ar-3p

1-7

8-11/18-21

12-17

-

c) hsa-miR-548az-3p

1-7

8-11/18-21

12-17

-

d) hsa-miR-548e-3p

-

-

1-22

-

e) hsa-miR-548f-3p

-

-

1-19

-

16

hsa-miR-576-5p/miR-576-5p

hsa-miR-576-5p

-

-

1-22

-

UUCUAAU

17

hsa-miR-548o-3p/miR-548-3p/1323

a) hsa-miR-548o-3p

1/22

2-6/17-21

7-16

 

CAAAACU

b) hsa-miR-1323

-

-

1-22

-

18

hsa-miR-320e/miR-320

hsa-miR-320e

1-4/18

5-6/16-17

7-15

-

AAGCUGG

19

hsa-miR-424-5p/miR-15-5p/16-5p/195-5p/424-5p/497-5p/6838-5p

a) hsa-miR-15a-5p

1-6

7-10/19-22

11-18

-

AGCAGCA

b) hsa-miR-15b-5p

1-3/16-22

4-5/14-15

6-13

-

c) hsa-miR-16-5p

1-5/22

6-7/20-21

8-19

-

d) hsa-miR-195-5p

1-2

3-4/10/15/20-21

11-14

5-9/16-19

e) has-miR-424-5p

1-4/21-22

5/10/12-13/19-20

69/14-18

11

f) hsa-miR-497-5p

1-2/15-21

3-6/11-14

7-10

-

g) hsa-miR-6838-5p

1-2/15-22

3-4/12-13

5-11

 

20

hsa-miR-450b-5p/miR-450-5p

hsa-miR-450b-5p

-

-

-

1-22

UUUGCAA

 

21

hsa-miR-142-5p/

miR-142-5p/5590-3p

a) hsa-miR-142-5p

1-5

6-10/17-21

11-16

-

AUAAAGU

 

b) hsa-miR-5590-3p

1-6/20-21

7-9/17-19

10-16

-

22

hsa-miR-29b-3p/miR-29-3p

a) hsa-miR-29a-3p

1-4/21-22

5-7/18-20

8-17

-

AGCACCA

 

b) hsamiR-29b-3p

1-2/22-23

3-6/19-21

7-18

-

c) hsa-miR-29c-3p

1-4/21-22

5-7/18-20

18-17

-

23

hsa-miR-589-3p/miR-589-3p

hsa-miR-589-3p

1-3/20-24

4-7/16-19

8-15

-

CAGAACA