Table 3: Reactome pathways identified by GSEA over-representation analysis.
Gene Set Name |
# Genes in Gene Set (K) |
# Genes in Overlap (k) |
k/K |
p-value |
FDR q-value |
REACTOME_IMMUNE_SYSTEM |
933 |
72 |
0.077 |
9.41E-12 |
6.34E-09 |
REACTOME_SIGNALING_BY_GPCR |
920 |
65 |
0.071 |
3.38E-09 |
1.14E-06 |
REACTOME_GPCR_DOWNSTREAM_SIGNALING |
805 |
58 |
0.072 |
1.18E-08 |
2.66E-06 |
REACTOME_ADAPTIVE_IMMUNE_SYSTEM |
539 |
43 |
0.080 |
5.58E-08 |
9.40E-06 |
REACTOME_HEMOSTASIS |
466 |
37 |
0.079 |
5.16E-07 |
6.96E-05 |
REACTOME_DEVELOPMENTAL_BIOLOGY |
396 |
32 |
0.081 |
2.04E-06 |
2.29E-04 |
REACTOME_METABOLISM_OF_LIPIDS_AND_LIPOPROTEINS |
478 |
35 |
0.073 |
6.30E-06 |
5.73E-04 |
REACTOME_CELL_CYCLE |
421 |
32 |
0.076 |
7.28E-06 |
5.73E-04 |
REACTOME_SIGNALLING_BY_NGF |
217 |
21 |
0.097 |
7.65E-06 |
5.73E-04 |
REACTOME_MHC_CLASS_II_ANTIGEN_PRESENTATION |
91 |
12 |
0.132 |
3.39E-05 |
2.28E-03 |
REACTOME_CELL_CYCLE_MITOTIC |
325 |
25 |
0.077 |
5.74E-05 |
3.52E-03 |
REACTOME_GROWTH_HORMONE_RECEPTOR_SIGNALING |
24 |
6 |
0.250 |
8.73E-05 |
4.90E-03 |
REACTOME_TRANSCRIPTIONAL_REGULATION_OF_WHITE_ADIPOCYTE_DIFFERENTIATION |
72 |
10 |
0.139 |
9.67E-05 |
5.01E-03 |
REACTOME_G_ALPHA1213_SIGNALLING_EVENTS |
74 |
10 |
0.135 |
1.22E-04 |
5.89E-03 |
REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION |
212 |
18 |
0.085 |
1.80E-04 |
7.56E-03 |
REACTOME_TRANSMEMBRANE_TRANSPORT_OF_SMALL_MOLECULES |
413 |
28 |
0.068 |
1.88E-04 |
7.56E-03 |
REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION |
251 |
20 |
0.080 |
1.91E-04 |
7.56E-03 |
REACTOME_P75_NTR_RECEPTOR_MEDIATED_SIGNALLING |
81 |
10 |
0.124 |
2.61E-04 |
9.79E-03 |
REACTOME_GPCR_LIGAND_BINDING |
408 |
27 |
0.066 |
3.54E-04 |
1.26E-02 |
REACTOME_PHASE1_FUNCTIONALIZATION_OF_COMPOUNDS |
70 |
9 |
0.129 |
3.87E-04 |
1.30E-02 |
REACTOME_OLFACTORY_SIGNALING_PATHWAY |
328 |
23 |
0.070 |
4.23E-04 |
1.30E-02 |
REACTOME_METABOLISM_OF_CARBOHYDRATES |
247 |
19 |
0.077 |
4.23E-04 |
1.30E-02 |
REACTOME_SIGNALING_BY_NOTCH |
103 |
11 |
0.107 |
4.71E-04 |
1.38E-02 |
REACTOME_AXON_GUIDANCE |
251 |
19 |
0.076 |
5.16E-04 |
1.45E-02 |
REACTOME_SIGNALING_BY_ILS |
107 |
11 |
0.103 |
6.51E-04 |
1.76E-02 |
REACTOME_INNATE_IMMUNE_SYSTEM |
279 |
20 |
0.072 |
7.41E-04 |
1.85E-02 |
REACTOME_NEURONAL_SYSTEM |
279 |
20 |
0.072 |
7.41E-04 |
1.85E-02 |
REACTOME_METABOLISM_OF_AMINO_ACIDS_AND_DERIVATIVES |
200 |
16 |
0.080 |
7.67E-04 |
1.85E-02 |
REACTOME_PLATELET_HOMEOSTASIS |
78 |
9 |
0.115 |
8.64E-04 |
1.97E-02 |
REACTOME_COSTIMULATION_BY_THE_CD28_FAMILY |
63 |
8 |
0.127 |
8.78E-04 |
1.97E-02 |
REACTOME_CYTOCHROME_P450_ARRANGED_BY_SUBSTRATE_TYPE |
51 |
7 |
0.137 |
1.15E-03 |
2.49E-02 |
REACTOME_MEIOSIS |
116 |
11 |
0.095 |
1.27E-03 |
2.69E-02 |
REACTOME_PLATELET_SENSITIZATION_BY_LDL |
16 |
4 |
0.250 |
1.40E-03 |
2.77E-02 |
REACTOME_XENOBIOTICS |
16 |
4 |
0.250 |
1.40E-03 |
2.77E-02 |
REACTOME_STRIATED_MUSCLE_CONTRACTION |
27 |
5 |
0.185 |
1.50E-03 |
2.88E-02 |
REACTOME_NGF_SIGNALLING_VIA_TRKA_FROM_THE_PLASMA_MEMBRANE |
137 |
12 |
0.088 |
1.56E-03 |
2.92E-02 |
REACTOME_GLUCOSE_METABOLISM |
69 |
8 |
0.116 |
1.60E-03 |
2.92E-02 |
REACTOME_LIPOPROTEIN_METABOLISM |
28 |
5 |
0.179 |
1.77E-03 |
3.15E-02 |
REACTOME_RNA_POL_I_RNA_POL_III_AND_MITOCHONDRIAL_TRANSCRIPTION |
122 |
11 |
0.090 |
1.91E-03 |
3.31E-02 |
REACTOME_NRAGE_SIGNALS_DEATH_THROUGH_JNK |
43 |
6 |
0.140 |
2.36E-03 |
3.97E-02 |
REACTOME_GENERIC_TRANSCRIPTION_PATHWAY |
352 |
22 |
0.063 |
2.42E-03 |
3.99E-02 |
REACTOME_PRE_NOTCH_EXPRESSION_AND_PROCESSING |
44 |
6 |
0.136 |
2.65E-03 |
4.26E-02 |
REACTOME_CELL_DEATH_SIGNALLING_VIA_NRAGE_NRIF_AND_NADE |
60 |
7 |
0.117 |
2.99E-03 |
4.68E-02 |
REACTOME_DNA_REPAIR |
112 |
10 |
0.089 |
3.24E-03 |
4.97E-02 |
REACTOME_ACTIVATION_OF_THE_AP1_FAMILY_OF_TRANSCRIPTION_FACTORS |
10 |
3 |
0.300 |
3.32E-03 |
4.97E-02 |