Table 2: KEGG pathways identified by GSEA over-representation analysis.
Gene Set Name |
# Genes in Gene Set (K) |
# Genes in Overlap (k) |
k/K |
p-value |
FDR q-value |
KEGG_PATHWAYS_IN_CANCER |
328 |
33 |
0.101 |
8.64E-09 |
1.61E-06 |
KEGG_JAK_STAT_SIGNALING_PATHWAY |
155 |
17 |
0.110 |
1.08E-05 |
1.00E-03 |
KEGG_INSULIN_SIGNALING_PATHWAY |
137 |
15 |
0.110 |
3.56E-05 |
1.76E-03 |
KEGG_DILATED_CARDIOMYOPATHY |
92 |
12 |
0.130 |
3.78E-05 |
1.76E-03 |
KEGG_MAPK_SIGNALING_PATHWAY |
267 |
22 |
0.082 |
5.72E-05 |
2.13E-03 |
KEGG_AXON_GUIDANCE |
129 |
14 |
0.109 |
7.06E-05 |
2.19E-03 |
KEGG_HYPERTROPHIC_CARDIOMYOPATHY_HCM |
85 |
11 |
0.129 |
8.49E-05 |
2.25E-03 |
KEGG_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION |
118 |
13 |
0.110 |
1.09E-04 |
2.53E-03 |
KEGG_OLFACTORY_TRANSDUCTION |
389 |
27 |
0.069 |
1.66E-04 |
3.44E-03 |
KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION |
272 |
21 |
0.077 |
2.06E-04 |
3.84E-03 |
KEGG_CARDIAC_MUSCLE_CONTRACTION |
80 |
10 |
0.125 |
2.36E-04 |
3.99E-03 |
KEGG_WNT_SIGNALING_PATHWAY |
151 |
14 |
0.093 |
3.74E-04 |
5.14E-03 |
KEGG_TIGHT_JUNCTION |
134 |
13 |
0.097 |
3.86E-04 |
5.14E-03 |
KEGG_PANCREATIC_CANCER |
70 |
9 |
0.129 |
3.87E-04 |
5.14E-03 |
KEGG_NUCLEOTIDE_EXCISION_REPAIR |
44 |
7 |
0.159 |
4.61E-04 |
5.56E-03 |
KEGG_LEISHMANIA_INFECTION |
72 |
9 |
0.125 |
4.78E-04 |
5.56E-03 |
KEGG_VIRAL_MYOCARDITIS |
73 |
9 |
0.123 |
5.30E-04 |
5.80E-03 |
KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY |
108 |
11 |
0.102 |
7.05E-04 |
6.84E-03 |
KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC |
76 |
9 |
0.118 |
7.15E-04 |
6.84E-03 |
KEGG_GLYCOLYSIS_GLUCONEOGENESIS |
62 |
8 |
0.129 |
7.88E-04 |
6.84E-03 |
KEGG_INTESTINAL_IMMUNE_NETWORK_FOR_IGA_PRODUCTION |
48 |
7 |
0.146 |
7.93E-04 |
6.84E-03 |
KEGG_FOCAL_ADHESION |
201 |
16 |
0.080 |
8.09E-04 |
6.84E-03 |
KEGG_CELL_ADHESION_MOLECULES_CAMS |
134 |
12 |
0.090 |
1.29E-03 |
1.04E-02 |
KEGG_P53_SIGNALING_PATHWAY |
69 |
8 |
0.116 |
1.60E-03 |
1.11E-02 |
KEGG_PYRUVATE_METABOLISM |
40 |
6 |
0.150 |
1.61E-03 |
1.11E-02 |
KEGG_MELANOGENESIS |
102 |
10 |
0.098 |
1.62E-03 |
1.11E-02 |
KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS |
138 |
12 |
0.087 |
1.66E-03 |
1.11E-02 |
KEGG_REGULATION_OF_ACTIN_CYTOSKELETON |
216 |
16 |
0.074 |
1.72E-03 |
1.11E-02 |
KEGG_TGF_BETA_SIGNALING_PATHWAY |
86 |
9 |
0.105 |
1.74E-03 |
1.11E-02 |
KEGG_BASAL_CELL_CARCINOMA |
55 |
7 |
0.127 |
1.80E-03 |
1.12E-02 |
KEGG_ASTHMA |
30 |
5 |
0.167 |
2.44E-03 |
1.45E-02 |
KEGG_LYSINE_DEGRADATION |
44 |
6 |
0.136 |
2.65E-03 |
1.45E-02 |
KEGG_HUNTINGTONS_DISEASE |
185 |
14 |
0.076 |
2.67E-03 |
1.45E-02 |
KEGG_ADHERENS_JUNCTION |
75 |
8 |
0.107 |
2.73E-03 |
1.45E-02 |
KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY |
75 |
8 |
0.107 |
2.73E-03 |
1.45E-02 |
KEGG_ACUTE_MYELOID_LEUKEMIA |
60 |
7 |
0.117 |
2.99E-03 |
1.54E-02 |
KEGG_CITRATE_CYCLE_TCA_CYCLE |
32 |
5 |
0.1562 |
3.27E-03 |
1.65E-02 |
KEGG_COLORECTAL_CANCER |
62 |
7 |
0.1129 |
3.60E-03 |
1.76E-02 |
KEGG_BASE_EXCISION_REPAIR |
35 |
5 |
0.1429 |
4.87E-03 |
2.32E-02 |
KEGG_PURINE_METABOLISM |
159 |
12 |
0.0755 |
5.30E-03 |
2.47E-02 |
KEGG_SMALL_CELL_LUNG_CANCER |
84 |
8 |
0.0952 |
5.50E-03 |
2.49E-02 |
KEGG_PROXIMAL_TUBULE_BICARBONATE_RECLAMATION |
23 |
4 |
0.1739 |
5.69E-03 |
2.52E-02 |
KEGG_ENDOMETRIAL_CANCER |
52 |
6 |
0.1154 |
6.17E-03 |
2.67E-02 |
KEGG_METABOLISM_OF_XENOBIOTICS_BY_CYTOCHROME_P450 |
70 |
7 |
0.1 |
7.04E-03 |
2.98E-02 |
KEGG_NON_SMALL_CELL_LUNG_CANCER |
54 |
6 |
0.1111 |
7.42E-03 |
3.07E-02 |
KEGG_DRUG_METABOLISM_CYTOCHROME_P450 |
72 |
7 |
0.0972 |
8.20E-03 |
3.27E-02 |
KEGG_CELL_CYCLE |
128 |
10 |
0.0781 |
8.26E-03 |
3.27E-02 |
KEGG_GALACTOSE_METABOLISM |
26 |
4 |
0.1538 |
8.91E-03 |
3.38E-02 |
KEGG_GLYCOSAMINOGLYCAN_BIOSYNTHESIS_HEPARAN_SULFATE |
26 |
4 |
0.1538 |
8.91E-03 |
3.38E-02 |
KEGG_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM |
76 |
7 |
0.0921 |
1.09E-02 |
4.06E-02 |